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    Dataset: CASENT0745229-Aphaenogaster.subterranea

    Alternate identifier:
    -
    Related identifier:
    -
    Creator/Author:
    Katzke, Julian https://orcid.org/0000-0002-1447-9660 [Katzke, Julian]

    Hita Garcia, Francisco https://orcid.org/0000-0003-4709-3083 [Hita Garcia, Francisco]

    Lösel, Philipp D. https://orcid.org/0000-0003-0506-1171 [Lösel, Philipp D.]

    Faragó, Tomáš https://orcid.org/0009-0006-9824-2797 [Faragó, Tomáš]

    Economo, Evan P. https://orcid.org/0000-0001-7402-0432 [Economo, Evan P.]

    van de Kamp, Thomas https://orcid.org/0000-0001-7390-1318 [van de Kamp, Thomas]

    Azuma, Fumika https://orcid.org/0000-0002-5275-8775 [Azuma, Fumika]

    Zuber, Marcus https://orcid.org/0000-0002-2429-6171 [Zuber, Marcus]

    Hamann, Elias https://orcid.org/0000-0002-0623-9069 [Hamann, Elias]

    Sarkar, Chandan https://orcid.org/0009-0001-4374-0231 [Sarkar, Chandan]
    Contributors:
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    Title:
    CASENT0745229-Aphaenogaster.subterranea
    Additional titles:
    -
    Description:
    (Technical Remarks) Processed micro-tomographic scan of the ant Aphaenogaster subterranea, scanned at KIT Light Source. This dataset is part of the open-source digitization project ‘Antscan’, with a database consisting of thousands of scanned ethanol-preserved ant ...
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    Keywords:
    aphaenogaster subterranea
    antscan
    ant
    synchrotron
    micro-CT
    biology
    biodiversity
    digitization
    tomography
    insect
    formicidae
    anatomy
    Related information:
    (Domain-specific Metadata) specimen_code = CASENT0745229, collection_code = ES18A078, taxon_code = Aphaenogaster.subterranea, lifestagesex_original_col = Q, subcaste_original_col = not_available, caste = queen, caste_detail = not_available, genome_associated = species, LTS_Box = LTS OIST 03, for_more_specimen = OIST 03, specimens_left = 2w, scanning_vial_box = ANTSCAN_XS_41, problems_det = not_available, problems_other = not_available, stained = unstained, scan_tray = tray_24, magnification = 5x_2steps, voxel_size = 2.44 µm, filter = 500 µm Al, projections = 3000, fps = 70.0, exposure_time_per_frame = 0.01 s, Genus = Aphaenogaster, Species = subterranea, Status = valid, Name = Aphaenogaster subterranea, Family_or_other = Formicidae, Subfamily = Myrmicinae, Tribe = Stenammini, Genus_authority = Mayr, 1853, Source = https://www.antwiki.org/wiki/Aphaenogaster, specimen_id = 51630.0, located_at = OIST, owned_by = FHGC, antscan_contributor = Enrico Schifani, determined_by = E. Schifani, insert_user_23 = fgarcia, collected_by = E. Schifani, method = not_available, sampling_effort = not_available, date_collected_start = 2018-06-30, date_collected_end = not_available, habitat = open field, microhabitat = not_available, behavior = not_available, disturbance_level = not_available, country = Italy, adm1 = Emilia-Romagna, adm2 = not_available, island_group = not_available, island = not_available, locality_name = Pontescodogna, latitude = 44.738241, longitude = 44.738241, latlong_error = not_available, elevation = 117.0, elevation_error = not_available, biogeographic_region = Palearctic
    Language:
    English
    Version:
    -
    Publishers:
    Karlsruhe Institute of Technology(KIT)
    Okinawa Institute of Science and Technology Graduate University(OIST)
    Production year:
    Subject areas:
    Biology
    Resource type:
    (Image) Dataset
    Data source:
    (Organism) Ant Specimen
    Software used:
    Resource processing
    Software:
    Python - 3.10.12
    Concert - 0.31.0
    ufo-core - 0.16
    ufo-filters - 0.16
    tofu - 0.9
    Fiji - 2.15.1
    numpy - 1.24.3
    SimpleITK - 2.3.1
    SciPy - 1.11.4
    Biomedisa - 23.09.1
    Alternative software:
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    Data processing:
    Tomographic data acquisition
    Reconstruction of absorption and phase contrast 32-bit tomograms
    Blending of both reconstructions
    8-bit conversion
    Stitching of height steps
    Cropping
    Publication year:
    Rights holders:
    Funding:
    BMBF (05K2019 & 05K2022)
    DFG (INST 35/1503-1 FUGG)
    Name Storage Metadata Upload Action
    Status:
    Published
    Uploaded by:
    radarips
    Created on:
    Archiving date:
    2025-05-07
    Archive size:
    8.2 GB
    Archive creator:
    radarips
    Archive checksum:
    990b9b8c9d80754edae8a95b32e481f6 (MD5)
    Embargo period:
    -